Giovanni Palla

I am a Research Scientist at the Chan Zuckerberg Initiative AI/ML team, working with Theo Karaletsos.

I have completed my PhD under the supervision of Fabian Theis at the Computational Health Center, Helmholtz Munich and the Munich School for Data Science. Additionally, I am co-founder and core developer of scverse, an open-source ecosystem for single-cell data analysis.

vitae / scholar / github / linkedin

I am interested in AI and Software for Computational Biology, endurance sports and books.

Moscot

Moscot

A framework for mapping cells in time and space with optimal transport.

Project Page | Paper (Nature, 2025)

SpatialData

SpatialData

An open and universal framework for multi-modal spatial omics data.

Project Page | Paper (Nature Methods, 2024)

Squidpy

Squidpy

Spatial single-cell analysis in Python.

Project Page | Paper (Nature Methods, 2022)

Spatial Components of Tissue Variation

Spatial Components of Tissue Variation

A perspective and review on open problems in tissue biology.

Paper (Nature Biotechnology, 2022)

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